Page 117 - Academic Press Encyclopedia of Physical Science and Technology 3rd BioChemistry
P. 117

P1: GMY/GlQ/GLT  P2: GRB Final Pages
 Encyclopedia of Physical Science and Technology  en010k-502  July 16, 2001  16:56







              Nucleic Acid Synthesis                                                                      855

                template. It is responsible for propagation of retro-  termediate. The enzyme acts as a swivel for rotating
                viruses via synthesis of a proviral DNA intermediate.  DNA strands around each other.
              Ribonucleotides Monomeric units of RNA, namely,   Trans-acting factors Proteins that bind to specificDNA
                adenylic (AMP), guanylic (GMP), cytidylic (CMP),  sequences (cis elements) in genes and regulate tran-
                and uridylic (UMP); the ribose sugar moiety of each  scription positively or negatively.
                contains a 2 -OH.                               Transcribed strand The 3 → 5 DNA strand utilized by



              Ribosome Protein synthesis factory consisting of two dif-  RNA polymerase as its transcriptional template.
                ferently sized subunits of ribonucleoprotein complexes  Transcriptional activator Trans-acting proteins which
                with several active centers. It travels along mRNA and  enhance transcription and, thus, the level of specific
                reads triplet codons for individual amino acids which  proteins.
                are brought in by transfer RNAs via base pairing with  Transcription unit Discrete segment of DNA, corres-
                cognate anticodon sequences in these RNAs. Protein  ponding to one or more genes, which is utilized as
                synthesis occurs on the ribosome to which the growing  a template by RNA polymerase. In prokaryotes, the
                polypeptide chain remains attached.               transcription unit is called an operon.
              RNA Ribonucleic acid: linear copolymers usually of four  Translation Synthesis of a protein, directed by mRNA
                ribonucleotides. Three major types of RNA are syn-  molecules on ribosome.
                thesized in the cell: ribosomal RNA (rRNA), the ma-
                jor component of ribosomes; transfer RNA (tRNA),
                the adaptor for protein synthesis; and messenger RNA  NUCLEIC ACIDS are involved in the most fundamen-
                (mRNA), which is required for information transfer.  tal processes of life. Their maintenance and production
                Other small RNAs with specialized functions are also  are essential in all living organisms. The hallmark of the
                synthesized in small amounts in both prokaryotic and  biosphere is diversity of biological processes, even among
                eukaryotic cells.                               members of the same genera, e.g., bacteria. Each organism
              RTPCR Reverse transcript polymerase chain reaction.  may have some unique features in regard to nucleic acid
                Modification of the PCR method to amplify RNA,   composition, structure, and metabolism. Thus, studies on
                which involves generation of a complementary DNA  nucleic acid synthesis constitute a huge topic of research
                molecule from RNA (by reverse transcriptase) which  on which thousands of research articles are published each
                is then used in PCR.                            year. Therefore, it is impossible to cover all aspects of nu-
              Telomerase A special eukaryotic DNA polymerase that  cleic acid synthesis in this short article. Our goal is to
                adds a repeat sequence to chromosome termini without  present a broad overview of the key and general features
                a template.                                     of structure, synthesis, and processing of the various types
              Telomere Terminal region of a linear chromosome, con-  of nucleic acids. We have limited our discussion mostly to
                taining partial single-stranded DNA and repeat se-  bacteria, specifically Escherichia coli, and to mammals,
                quences of short oligonucleotides. Its loss could cause  mostly humans and mice. Most of our current knowledge
                chromosome fusion and rearrangement.            has been derived from the studies of those organisms.
              Template-independent poly(A) polymerase A temp-     We have also provided appropriate references, which
                late-independent RNA polymerase which catalyzes  are mostly recent reviews. The readers should be able to
                formation of AMP containing homopolymers up to  peruse these for in-depth knowledge of the topics which

                several hundred monomers at the 3 termini of nascent  are covered only superficially here. Finally, we have in-
                RNA molecules. The poly(A) tail promotes transport  cluded a glossary at the beginning of this article which
                of mRNA from the nucleus, enhances its stability, and  lists common acronyms and short descriptions of key pro-
                is necessary for translation.                   cesses and phenomena.
              Terminator Specific sequence found at the end of genes
                for termination of transcription due to release of RNA  I. STRUCTURE AND FUNCTION
                and RNA polymerase.
              Topoisomerase Enzymes which alter topologically con-  OF NUCLEIC ACIDS
                strained DNA, including circular DNA, by changing
                                                                A. Basic Chemical Structure
                the linking number. Topoisomerase I changes the link-
                ing number one at a time and does not require an exter-  The basic information for all activities in living systems,
                nal energy source. Topoisomerase II changes the link-  at least on our planet, is stored ultimately in nucleic acids,
                ing number two at a time and generally requires ATP.  namely, deoxyribonucleic (DNA) and ribonucleic (RNA)
                The linking number is changed by transient breakage  acids. Except for certain viruses, DNA is the universal
                and rejoining, with an enzyme-DNA covalent bond in-  genetic material (Fig. 1). The chemical structures of basic
   112   113   114   115   116   117   118   119   120   121   122