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336   MOLECULAR SIMULATION OF GAS ADSORPTION IN MINERALS AND COAL

            sample to the other (Day et al., 2008; Ottiger et al., 2008;   1.4
            St George and Barakat, 2001).
              The system simulated consists of coal and pure com­     1.2
            ponent  of  CH .  The  initial  configuration  consists  of  12
                        4
              randomly placed coal molecules. All molecules are randomly   1.0
            placed in an empty space of a simulation box, which is
            large enough to accommodate the coal molecules and has   Absolute CH 4  adsorption (mmol/g)  0.8
                                                  3
            x,  y, and  z‐dimensions  of  3.2 × 3.2 × 3.2 nm , shown in   0.6
            Figure 15.9.                                                               Simulation   (0 wt% water)
              In MD simulations, the behavior of a large number of    0.4              Simulation   (1.2 wt% water)
            atoms in the simulation box is followed as a function of                   Simulation   (3.0 wt% water)
                                                                                       Langmuir  t (0  wt% water)
            time by Newton’s laws. Periodic boundary conditions are   0.2              Langmuir  t (1.2 wt% water)
            applied in three directions. The movement of the atoms                     Langmuir  t (3.0 wt% water)
            within the simulation box is governed by an interatomic   0.0
            interaction potential between all atoms (force field). This   0     2      4       6      8      10
            is  the core of the MD simulations, as the accuracy of                      P (MPa)
            the results mainly depends on the choice of the potential.   FIGURE 15.10  Comparison of experimental and simulated CH
                                                                                                                4
            The most accurate potential would originate from quantum   adsorption isotherm (absolute adsorption).
            mechanical calcu lations, but in practice, it is computation­
            ally expensive,  limiting the timescale and the number of
            atoms that can be simulated. There is always a compromise   TAbLE 15.5  Langmuir constants extracted by fitting
            between  accuracy and feasibility. Therefore, in practice, we   the Langmuir isotherm model to our simulated absolute
            make use of empirical potentials, based on a large number   adsorption curve
            of parameters, which are typically fitted against density           Langmuir constant  Langmuir constant
            functional theory calculations.                                                                 −1
              The coal molecules modeled are flexible and movable.                 L (mmol/g)         B (MPa )
            They are described using the GROMOS force field      0 wt% water         1.396              1.052
            (Oostenbrink et al., 2004). In this force field, aliphatic   1.2 wt% water  1.275           0.746
            carbon atoms are treated as united atoms, that is, the carbon   3.0 wt% water  1.036        0.700
            and  the  hydrogens  that  are  bonded  to  it  are  treated  as  a
            single atom, reducing computational effort up to a factor of
            9 at the expense of neglecting the slight directional and   the density over the simulation time was monitored to check
            volume effects of the presence of these hydrogens. Detailed   for  the  equilibration  conditions.  To  get  good  statistics,
            parameter sets can be found in Oostenbrink et al. (2004). In     simulations should run sufficiently long enough. A typical
            contrast to other biomolecular force fields, this parameteri­  production run was 40 ns after the system reaches equilibrium.
            zation of the GROMOS force field is based primarily on
            reproducing the free enthalpies for a range of compounds.   15.2.4.2  Result and Discussion  Absolute adsorption
            The relative free enthalpy is a key property in many biomo­  (the actual amount of adsorbate present in coal matrix) iso­
            lecular processes of interest and is why this force field was   therms for CH  on dry coal and moist coal with 1.2 and
                                                                             4
            selected. Hydrocarbon molecules are also modeled using   3.0 wt% water at 308 K are shown in Figure 15.10. To inves­
            GROMOS force field treating the carbon and the hydrogens   tigate the adsorption rate, we fit the simulation data of the
            that are bonded to it as a single atom. The nonbonded inter­  absolute adsorption using the Langmuir equation.
            actions between atoms which are separated by more than   The Langmuir constants obtained by the fitting are listed
            three bonds, or belong to different molecules, are described   in  Table  15.5.  Figure  15.10 indicates  that  the  absolute
            by pair wise‐additive LJ.                            adsorption of CH  on both the dry and the moist coal
                                                                                4
              The equations of motion were integrated with a time step   follows the Langmuir isotherm. Sitprasert et al. (2011) has
            of 0.001 ps (peco‐second). Each MD run was done in two   justified the Langmuir isotherm as a good approximation to
            steps. The first step consisted of a 5 ps simulation using the   the results from microscopic simulations being based on
            steepest‐descent method to perform energy minimization to   curve fitting with simulation results.  We obtained the
            reduce the thermal noise in the structures and potential   Langmuir sorption constant of 1.396 mmol/g for CH  on
                                                                                                             4
            energies, which can prevent the crash of the simulation due   intermediate rank coal at 35°C on a dry and ash‐free basis.
            to bad contact (extremely large force) between molecules.   Weniger et al. (2010) reported the Langmuir sorption
            The second step of 50 ns (nano‐second) included equilibrium   constant of 0.99 mmol/g, obtained from approximation of
            run  (10 ns)  and  production  run  (40 ns).  The  evolution  of   their experimental data on a coal sample with a total organic
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