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2

                                 Enzymology takes a quantum leap forward


                                    Michael J. Sutcli≈e and Nigel S. Scrutton  2
                                                        1
                                    1  Department of Chemistry, University of Leicester, Leicester LE1 7RH, UK
                                    2  Department of Biochemistry, University of Leicester, Leicester LE1 7RH, UK











                                 2.1 Introduction

                                 Enzymes facilitate life via a plethora of reactions in living organisms. Not
                                 only do they sustain life – they are also involved in a myriad of processes
                                 that affect our everyday lives. These include applications in medicine,
                                 household detergents, fine chemical synthesis, the food industry, bioelec-
                                 tronics and the degradation of chemical waste. Since the discovery of
                                 enzymes just over a century ago, we have witnessed an explosion in our
                                 understanding of enzyme catalysis, leading to a more detailed appreciation
                                 of how they work. Over many years, much effort has been expended in the
                                 quest to create enzymes for specific biotechnological roles. Prior to the
                                 early 1980s, the only methods available for changing enzyme structure
                                 were those of chemical modification of functional groups (so-called ‘forced
                                 evolution’). The genetic engineering revolution has provided tools for dis-
                                 secting enzyme structure and enabling design of novel function. Chemical
                                 methods have now been surpassed by knowledge-based (i.e. rational) site-
                                 directed mutagenesis and the grafting of biological function into existing
                                 enzyme molecules (so-called ‘retrofitting’). More recently, gene-shuffling
                                 techniques have been used to generate novel enzymes. Rational redesign
                                 of enzymes is a logical approach to producing better enzymes. However,
                                 with a few notable exceptions, rational approaches have been generally
                                 unsuccessful, reiterating our poor level of understanding of how enzymes
                                 work. This has led to a more ‘shot-gun’ approach to redesign, involving


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