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282   Principles and Methods

        where R and R are the respective diameters of the particles and the
                A
                       p
        pores; 
 is the gel volume fraction. This equation is based on a number
        of limiting assumptions such as the particles being perfect spheres and
        the particle and pore sizes being described each by a single value.
        Although the theoretical constraints of this equation will rarely be met
        in natural gels and biofilms, it provides some insight into the role of par-
        ticle and pore size as they affect the steric contribution.
          Steric effects on diffusion can also be viewed in terms of decrease in
                                     2
        mean squared displacement, x std A , that occurs as the particle moves
        through a fractal structure [97, 103–107]:

                                   2
                                      A
                                  x std 5  t 2>d w                    (32)
        where d is the fractal dimension of diffusion and   is proportional to
                w
        the constrained diffusion coefficient. In normal random diffusion, d w is
        equal to 2 (Eq. 29). In anomalous diffusion, d w greater than 2 corre-
        sponds to the slowing down of the transport caused by the delay of the
        diffusing particles in the disordered structure. By measuring the respec-
                                    A
        tive characteristic times t c (x) required for the nanoparticle to cover
        several distances x in the disordered structure shown in Figure 7.31, one

           60
                  50 mm
           50     300 mm
          Particle concentration (A.U.)  40  1050 mm
                  550 mm
                  800 mm


           30


           20

           10


            0
            0.001      0.01       0.1        1        10        100
                                    Time (min)
        Figure 7.31 Concentration profile according to time and distance in an agarose
        gel (1.5 wt%) of a nanoscale particle (protein R-phycoerythrin, Rh ~ 4.5 nm)
        incorporated at time 0 and distance 0. The t c value obtained from the intersec-
        tion between the horizontal background concentration and the linear increase in
        concentration in semi-log plot, points the characteristic time at which the
        nanoparticle reaches the corresponding distance. Fluorescence correlation spec-
        troscopy data from [108].
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