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262                          10.  Research methods in flow assurance

                 polypeptide. Docking may well be the mechanism of hydrate inhibition by these polymers.
                 However, there is a contradiction between the difference in performance of these polymers in
                 inhibiting hydrate formation and similarity of results of the docking study. This suggests that
                 a more detailed study of adsorption of inhibitors on hydrate in water solution is necessary.

                 Studying of kinetic inhibitor interaction with water: Solvation of the polymer
                 in the bulk water

                 Introduction
                   Structural changes in liquid water were investigated in the second part of the computer
                 studies of gas hydrate inhibition. This testing of the second kinetic hydrate inhibition mecha-
                 nism hypothesis (destruction of structure in the bulk water) was performed using molecular
                 dynamics. Different polymers or their monomers were solvated in SPC water, depending on
                 the desired polymer concentration. Effects of each polymer on the structure of water was ob-
                 tained by comparing it with the structure of pure SPC water at the same conditions.
                   The work was started with selecting the SPC water model for use after the comparison of
                 water models available in SYBYIT. Melting point of the SPC water model was fit to 200 K as
                 reported (Karim et al., 1990) by scaling of the electrostatic interactions. This was followed by
                 determination of the structure of water at 203 and 220 K (scaled 277 and 298 K). Simulation of
                 the polymer solutions and analysis of the structure of solvent concluded this work. Initially
                 the models of water available in SYBYL were verified by comparing the oxygen-oxygen
                 radial distribution function of simulated and real water at 298 K, with results presented in
                 Fig. 10.33. The radial distribution function (RDF) measures local density as a function of dis-
                 tance. RDF can be viewed as the probability of finding a water molecule at a certain distance
                 from a particular water molecule. Integration of the area under the first peak represents the
                 number of the nearest neighbors. The best fits of simulation to data were obtained for the SPC
                 (simple point charge) and the TIP3p (transferable intermolecular potential 3 point) models.
                 Based on this result the SPC water model was selected. A comparison of oxygen- hydrogen
                 radial distribution functions for the SPC model and water was made. The oxygen-hydrogen
                 radial distribution function indicates the average length of hydrogen bonds in water through
                 the position of the first peak. A good comparison was obtained between the experimental
                 data (Soper and Phillips, 1986) and the simulation results (Fig. 10.34). This completed the
                 verification of the water model radial distribution function. The most interesting outcome of
                 this part of the work is that the kinetic inhibitors affect the structure of hydrogen bonded net-
                 work of water molecules in such a way as to make hydrate formation more difficult. This was
                 discovered through the counting of rings in three dimensional hydrogen bonded network of
                 water in a fashion similar to that described by Rahman and Stillinger (1973). The structure of
                 water can be described as a network of hydrogen bonds connecting almost all water mole-
                 cules, with only a small number of molecules free of the network. At higher temperatures, the
                 energy of hydrogen bonding (approximately 5 kcal/mol) is insufficient to keep the moving
                 water molecules together and the network of hydrogen bonds becomes very loose. As the
                 temperature decreases, water molecules vibrate less and a dense network of dynamic hy-
                 drogen bonds is formed. Hydrogen bonds in this network are arranged in rings which form
                 and rearrange with time. Rings sizes are measured in terms of the number of participating
                 water molecules. The most probable sizes of hydrogen bonded rings are 5 and 6. For a com-
                 parison, water molecules in ice (hexagonal Ih) are arranged exclusively as 6-membered rings,
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