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350    Chapter  Nine

               pH (pH 2). All the LCPs stained amyloid plaques associated with sys-
               temic amyloidoses and local amyloidoses, such as type 2 diabetes
               and Alzheimer’s disease (AD). Similar to results obtained on in vitro
               formed amyloid fibrils, PTAA shows a red-shifted spectrum with a
               maximum around 580 nm upon binding to amyloid plaques, whereas
               amyloid deposits stained by PONT emit light with a more green-
               yellowish hue. Hence, upon binding to amyloid plaques in tissue
               samples, the rotational freedom of the thiophene rings and the geom-
               etry of the backbone are restricted, leading to a specific emission pro-
               file from the LCP similar to what was observed on pure amyloid
               fibrils in solution. Furthermore, some results were suggesting that
               PTAA emits light of different colors upon binding to different amyloid
               subtypes. 110
                   The conformation-induced change of the fluorescence is a unique
               property seen for LCPs that cannot be achieved by sterically rigid
               conventional amyloid ligands dyes such as thioflavin T (ThT) and
               Congo red. Thus, LCPs offer the possibility to obtain a specific spec-
               troscopic signature for individual protein aggregates. As mentioned
               earlier, there are many fundamental questions regarding this aggrega-
               tion process that remain unanswered, and the underlying mechanism
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               of amyloid or protein aggregate formation is poorly understood.   In
               this regard, the technique using LCPs, which provides a direct link
               between spectral signal and protein conformation, might provide an
               opportunity to gain more information concerning the morphology of
               the protein deposits and might facilitate a greater understanding of
               the conformational phenotype encoded in the protein aggregates.
               Instead of looking at the total amount of protein aggregates, hetero-
               genic population of specific protein aggregates could be observed,
               and novel findings regarding toxic species and the molecular mecha-
               nism of these diseases could be obtained with the LCP technique.
               These assumptions have also been verified with experimental data
               using transgenic mouse model having AD pathology and transgenic
               mice infected with distinct prion strains. 111–112
                   Upon application of LCPs to transgenic mouse models having
               AD pathology, a striking heterogenicity in the characteristic plaques
               composed of the A-beta peptide was identified.  LCP staining of
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               brain tissue slices revealed different subpopulations of plaques, seen
               as plaques with different colors (Fig. 9.9). The spectral features of
               LCPs enable an indirect mapping of the plaque architecture, as the
               different colors of the LCPs are associated with different conforma-
               tions of the polymer backbone. These findings can lead to novel ways
               of diagnosing AD and also provide a new method for studying the
               pathology of the disease in a more refined manner.  Especially, the
               LCP technique might be valuable for identifying distinct toxic entities
               giving rise to cell death and loss of neurons, or for establishing a cor-
               relation between the type of plaque and the severity of AD. However,
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