Page 370 - Applied Probability
P. 370
Index
360
in Lander-Green-Kruglyak al-
Group specific component (Gc),
146–147
gorithm, 188
in Poisson-skip process, 269
Guanine, 341
in radiation hybrids, 241
Haldane’s model, see Chiasma(ta), Hidden trials
Haldane’s model binomial, 36
Hall’s marriage theorem, 235 EM algorithm for, 36, 37
multinomial, 37
Halobacteria, 215
Poisson or exponential, 37
Hamming distance, 303
Histone proteins, 342
minimum, 303, 313
Homologous pairs, 1
Haplotype, 4
Homology, 308
contingency table counts, 76
testing DNA sequences for,
frequency estimation, 51, 55,
308–310
56
Homozygote, 1
Haplotyping, 186
Household indicator matrix, 142
Haptoglobin locus, 42
HUMTH01 locus data, 50
Hardy-Weinberg equilibrium, 2
Huntington disease, 109
assumptions, 4
Hybridization, in situ, 62, 64
at autosomal loci, 6
Hyperbolic trigonometric functions
at X-linked loci, 6, 14
generalization of, 275
convergence when generations
Hypergeometric distribution, 154
overlap, 14
approximation by Poisson, 312
for Xg(a) locus, 8
testing for, 59–62, 73
Identity by descent, 81
among racially mixed sub-
Identity by state, 81
populations, 70
Identity coefficient
Hastings-Metropolis algorithm, 173–
condensed, 85
175
in calculating risk ratios,
acceptance probability, 173
102
for descent graphs, 184 relation to kinship coeffi-
symmetric proposal density, cient, 85, 91
173, 196 used for genotype predic-
Hazard rate, 272 tion, 97
for Poisson-skip model, 277 Identity states
Hemizygote, 7 condensed and detailed, 84
Hemoglobin partitions for linkage statis-
codon model for, 221 tics, 193
mutations in, 66 Importance sampling, 196
Heritability, 157 In situ hybridization, see Hybridiza-
Heterozygote, 1 tion, in situ
probability of, 13 In-trees, 226
Heterozygote advantage, 11 Inbreeding coefficient, 34, 81
HhaI restriction site, 195, 282 path formula for computing,
Hidden Markov chains 94
