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               152                                                                                   Mass Spectrometry


                 MALDI is carried out in a mass spectrometer that uses a
               time-of-flight (TOF) mass analyzer (described in the next
               section). The relevant characteristics of the TOF are its
               unlimited mass range, its inherent compatibility with a
               pulsed ionization source, and the fact that all ions of all
               masses are recorded in the mass spectrum generated by
               each laser pulse (i.e., there is no scanning of the mass ana-
               lyzer). The TOF is a high-transmission mass analyzer that
               allows useful mass spectra to be measured even with the
               small absolute number of ions that leave the irradiated sur-
               face. The relatively low mass resolution of the TOF is ren-
               dered irrelevant by the broad isotopic envelope of higher  FIGURE 1 General diagram for a double focusing sector mass
               mass ions, and the unlimited mass range (determined sim-  analyzer.
               ply by how long the analyst waits for the ions to make their
               waydownthe flight tube) has moved MALDI-TOF mass   ion detector, and a double focusing instrument combines
               spectrometry into the regime of sample molecular masses  an electric sector and a magnetic sector into an analyzer
                       6
                   4
               of 10 –10 Dalton. Finally, TOF is a simple device, and  operated as a single unit (Fig. 1).
               costs are low. Benchtop MALDI-TOF instruments at low  An ion beam of constant kinetic energy (but contain-
               cost proliferate into a large number of laboratories, where  ing ions of different masses) is created in the ion source.
               new uses for the data they provide are found.     The kinetic energy is derived from the potential differ-
                 The “matrix assistance” in MALDI is a matrix effect  ence (V ) between the source and the flight tube of the
               like any other. A matrix effect is a deviation in measured  mass spectrometer, which is usually held at ground po-
                                                                                           2
               response in either direction from that expected from the  tential. Therefore, zeV = 1/2 mv , where z is the number
               analyte in the absence of the matrix. The usual assumption  of charges on the ion, e is the magnitude of the charge,
               is that the deviation is in a negative direction (analytical  m is the mass of the ion, and v is the velocity. All pa-
               signal is diminished) or that signal to noise, at least, is  rameters in the equation must be expressed in proper mks
               reduced in the presence of a matrix. Following this as-  units (volts, coulombs, kilograms, and meters per second).
               sumption, chemists routinely strive for high sample purity  A charged particle passing through a magnetic field ex-
               before analysis. However, purification of sample for trace  periences a force that is directed at right angles to both
               level analysis may leave the sample more reactive or more  the velocity vector and the magnetic field vector. Cen-
               sensitive to loss processes. MALDI is a superb example in  tripetal and centrifugal forces are balanced as the ion fol-
               which the matrix supports the ability to perform the anal-  lows a circular path of radius r while in the magnetic
                                                                                 2
               ysis in the first place, and the deviation is advantageous.  field. Therefore mv /r = zevB, where B is the magnetic
                                                                 field strength. Solve both equations for v, and then set-
                                                                 ting the equations equal to each other yields the classic
               C. Mass Analyzers                                                  2  2
                                                                 equation of m/ze =r B /2V . Since e is a constant, it is
               The mass analyzer is the heart of the mass spectrome-  usually not listed specifically in the equation. If one solves
               ter. In the mass analyzer, some aspect of ion response to  for r instead (the radius of the magnetic field sector), the
               electric or magnetic fields is exploited so that ions of dif-  mathematic expression that results, r = mv/zeB, shows
               ferent masses can be differentiated. Salient characteristics  explicitly that the radius of curvature of the path of an ion
               of mass analyzers are mass range, mass resolution, ion  passing through the magnetic field is proportional to its
               transmission, and as discussed in a previous section, scan  momentum (mv). Since r is fixed, at any given B, only
               times.                                            ions with one momentum will pass through the ion optics
                                                                 to make it through to the ion detector of the instrument.
                                                                 Other ions collide with the walls of the flight tube and are
                 1. Magnetic and Electric Sectors
                                                                 neutralized there.
               Ions of different mass but a constant kinetic energy will be  Sincer is fixed, there are two parameters that can be var-
               dispersed in velocity direction by passage through a mag-  ied to change the mass of the ions that passes through the
               netic field. The term “sector” derives from a nomenclature  magnetic sector mass analyzer to the ion detector. These
               that divides a magnetic field into sectors of various angu-  are B, the magnetic field strength, and V , the accelerat-
               lar dimensions. Magnetic sector mass spectrometers are  ing potential of the source. To maximize the transmission
               of two general types. Single focusing instruments consist  of ions out of the ion source into the mass analyzer, and
               of a single magnetic sector between the ion source and the  then out of the mass analyzer into the ion detector, the
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