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Molecular modeling                         273

                       Number of hydrogen
                       bonded rings
                        140   6
                                                                          -
                        120


                        100  5
                               7
                               8
                         80
                                9
                         60     10


                         40
                             4
                         20

                         0
                              1    2     3    4     5    6     7    8    9     10
                                                  Time  (90+n)  ps
            FIG. 10.44  Variation of the numbers of the hydrogen bonded polygons in water at model time 91–100 ps. Columns
            in each histogram represent four- to ten-membered hydrogen bonded rings.



            Results of hydrogen bonded water network study
              A run was made to determine the distribution of hydrogen bonded rings in SPC water.
            This simulation was run for 80,000 fs, including three 10,000 timesteps equilibration periods
            in NVE, NTV and NVE ensembles without scaling of the dielectric constant. The simulation
            box consisted of 318 SPC water molecules with the default charges on them. The water mol-
            ecules geometries were restrained using the SHAKE algorithm which allowed the increased
            time step size of 1 fs. All the subsequent simulations used the SHAKE algorithm. The re-
            sults for the distribution of hydrogen bonded rings in SPC water at the temperature of 298 K
            are shown in Fig. 10.45. It can be seen from this figure that the maximum size of hydrogen
            bonded polygons is 14 for the used parameters. The important outcome of this calculation is
            that the 5- and 6-membered rings dominate the structure of water. This result is similar to the
            results from the study of water structure by Rahman and Stillinger (1973) which was shown
            in Fig. 10.40.
              It should be noticed that gas hydrates have only 5- and 6-membered rings in their ideal
            lattice structure. This suggests that the larger part of the hydrogen bonded network of  water
            molecules is already present in the bulk of water. Hydrate formation only reorganizes it
            somewhat around apolar molecules. Studying the effect of macromolecules in redistribution
            of hydrogen bonded rings in water was the next step in this study.
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