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172 MACROMOLECULAR CRYS TALLOGRAPHY
Ritter, H., Martinetz, T. and Schulten, K. (1992). Neural Terwilliger, T. C. and Berendzen, J. (1999). Automated
Computations and Self-Organized Maps: An Introduction. MAD and MIR structure solution. Acta Crystallogr. D 55,
Addison-Wesley. 849–61.
Skubak, P., Murshudov, G.N. and Pannu, N.S. (2004) Theodoridis, S. and Koutroumbas, K. (2006). Pattern
Direct incorporation of experimental phase information Recognition. Academic Press, London.
in model refinement. Acta Crystallogr. D60, 2196–2201. Tronrud, D. E. (2004). Introduction to macromolecular
Sheldrick, G. M. and Schneider, T. R. (1997). SHELXL: refinement. Acta Crystallogr. D 60, 2156–2168.
High-resolution refinement. Method Enzymol. 277, Tronrud, D. E., Ten Eyck, L. F. and Matthews, B. W. (1987).
319–343. An efficient general-purpose least-squares refinement
Swanson, S. M. (1994). Core tracing: depicting connections program for macromolecular structures. Acta Crystallogr.
between features in electron density. Acta Crystallogr. D A 43, 489–501.
50, 695–708. Turkenburg, J. P. and Dodson, E. J. (1996). Modern devel-
Terwilliger, T. (2004). SOLVE and RESOLVE: automated opments in molecular replacement. Curr. Opin. Struct.
structure solution, density modification and model Biol. 6, 604–610.
building. J. Synchr. Rad. 11, 49–52. Weeks, C. M., Shah, N., Green, M. L., Miller, R. and
Terwilliger, T. C. (2001). Map-likelihood phasing. Acta Furey, W. (2005). Automated web- and grid-based pro-
Crystallogr. D 57, 1763–1775. tein phasing with BnP. Acta Crystallogr. A 61 (Suppl.),
Terwilliger, T. C. (2003a). Automated main-chain model C152.
building by template matching and iterative fragment Weichenrieder, O., Repanas, K. and Perrakis, A. (2004)
extension. Acta Crystallogr. D 59, 38–44. Crystal structure of the targeting endonuclease of the
Terwilliger, T. C. (2003b). Automated side-chain model human LINE-1 retrotransposon. Structure 12, 975–986.
building and sequence assignment by template match- Winn, M.D., Murshudov, G.N. and Papiz, M.Z. (2003)
ing. Acta Crystallogr. D 59, 45–49. Macromolecular TLS refinement in REFMAC at moder-
Terwilliger, T. C. (2003c). Improving macromolecular ate resolutions. Methods Enzymol. 374, 300–321.
atomic models at moderate resolution by automated Zwart, P. H., Langer, G. G. and Lamzin, V. S. (2004).
iterative model building, statistical density modification Modelling bound ligands in protein crystal structures.
and refinement. Acta Crystallogr. D 59, 1174–1182. Acta Crystallogr. D 60, 2230–2239.