Page 11 - Color Atlas of Biochemistry
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2         Basics



             Periodic table                                   tailed discussions of the subject are available
                                                              in chemistry textbooks.
                                                                 The possible states of electrons are called
             A. Biologically important elements
                                                              orbitals. These are indicated by what is
             There are 81 stable elements in nature. Fifteen  known as the principal quantum number
             of these are present in all living things, and a  and bya letter—s,p,ord. The orbitals are
             further 8–10 are only found in particular or-    filled one by one as the number of electrons
             ganisms. The illustration shows the first half   increases. Each orbital can hold a maximum of
             of the periodic table, containing all of the bio-  two electrons, which must have oppositely
             logically important elements. In addition to     directed “spins.” Fig. A shows the distribution
             physical and chemical data, it also provides     of the electrons among the orbitals for each of
             information about the distribution of the ele-   the elements. For example, the six electrons of
             ments in the living world and their abun-        carbon (B1) occupy the 1s orbital, the 2s orbi-
             dance in the human body. The laws of atomic      tal, and two 2p orbitals. A filled 1s orbital has
             structure underlying the periodic table are      the same electron configuration as the noble
             discussed in chemistry textbooks.                gas helium (He). This region of the electron
                More than 99% of the atoms in animals’        shell of carbon is therefore abbreviated as
             bodies are accounted for by just four ele-       “He” in Fig. A. Below this, the numbers of
             ments—hydrogen (H), oxygen (O), carbon (C)       electrons in each of the other filled orbitals
             and nitrogen (N). Hydrogen and oxygen are        (2s and 2p in thecaseofcarbon) areshown on
             the constituents of water, which alone makes     the right margin. For example, the electron
             up 60–70% of cell mass (see p.196). Together     shell of chlorine (B2)consists ofthatof neon
             with carbon and nitrogen, hydrogen and oxy-      (Ne) and seven additional electrons in 3s and
             gen are also the major constituents of the       3p orbitals. Iniron(B3), a transition metal of
             organic compounds on which most living           the first series, electrons occupy the 4s orbital
             processes depend. Many biomolecules also         even though the 3d orbitals are still partly
             contain sulfur (S) or phosphorus (P). The        empty. Many reactions of the transition met-
             above macroelements are essential for all or-    als involve empty d orbitals—e. g., redox reac-
             ganisms.                                         tions or the formation of complexes with
                A second biologically important group of      bases.
             elements, which together represent only             Particularly stable electron arrangements
             about0.5% ofthe body mass,are presental-         arise when the outermost shell is fully occu-
             most exclusively in the form of inorganic ions.  pied with eight electrons (the “octet rule”).
             This group includes the alkali metals sodium     This applies, for example, to the noble gases,
                                                                                         –
                                                                                             2
                                                                                                 6
             (Na) and potassium (K), and the alkaline earth   as well as to ions such as Cl (3s 3p )and Na +
                                                                    6
                                                                 2
             metals magnesium (Mg) and calcium (Ca). The      (2s 2p ). It is only in the cases of hydrogen
             halogen chlorine (Cl) is also always ionized in  and helium that two electrons are already
             the cell. All other elements important for life  suf cient to fill the outermost 1s orbital.
             are present in such small quantities that they
             are referred to as trace elements.These in-
             clude transitionmetals suchas iron(Fe), zinc
             (Zn), copper (Cu), cobalt (Co) and manganese
             (Mn). A few nonmetals, such as iodine (I) and
             selenium (Se), can also be classed as essential
             trace elements.



             B. Electron configurations: examples
             The chemical properties of atoms and the
             types of bond they form witheachother are
             determined by their electron shells. The elec-
             tron configurations of the elements are there-
             fore also showninFig. A.Fig. B explains the
             symbols and abbreviations used. More de-


           Koolman, Color Atlas of Biochemistry, 2nd edition © 2005 Thieme
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