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Algal Cells, Cartilage, and IRENI    31


            Another important issue with respect to working with biological
        samples in vivo is to maintain living samples, especially for samples
        that require water, such as phytoplankton. Many IR transparent
        materials used for commercial, conventional flow cells are hygro-
        scopic or poisonous, and thus not suitable for this application. Fur-
        thermore, they are dependent on thick windows, which cannot be
        used with the high-magnification objectives required for high-quality
        spatially resolved images in both the IR and visible bandwidths. The
        Section 2.2 of this chapter presents results using a newly designed
        flow chamber that addresses these issues and maintains hydrated,
        living cells in a 15-μm layer of water. 18
            The third part of this chapter is based on a recent biomedical
        application of synchrotron-based IR studies of minerals embedded
        in cartilage tissues of osteoarthritic joints. The data allowed spectral
        identification of small (~1 to 10  μm) calcium containing crystals
        embedded in arthritic tissues and model systems, including calcium
        pyrophosphate dihydrate (CPPD) and basic calcium phosphate
        (BCP) crystals that are common components of osteoarthritic joints
        and contribute to the irreversible tissue destruction seen in this form
        of arthritis. 24
            In the summary, future experiments will be described. These
        experiments will combine all of the above advances, studying in vivo,
        biologically important samples at diffraction-limited spatial resolu-
        tion for all mid-IR wavelengths. Importantly, these results will be
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        achievable on a rapid timescale of 1 minute per 40 × 60 μm image
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        with 0.54 × 0.54 μm pixels, such that dynamic processes can be fol-
        lowed with chemical specificity.

   2.2  IR Environmental Imaging
        IR Environmental Imaging (IRENI), a new IR beamline at the Synchro-
        tron Radiation Center, Stoughton, Wisconsin, is designed to accept a
        swath of radiation from the synchrotron and reshape the beam to illu-
                          2
        minate a 40 × 60 μm  sample area of an IR microscope. Traditionally,
        synchrotron beamlines extract one beam that illuminates the sample
        plane with a two-dimensional gaussian profile (FWHM of between
        10 × 10 μm to 15 × 15 μm ). For the new beamline, 12 overlapped beams
                 2
                            2
        illuminate a Bruker Hyperion 3000 microscope that is equipped with
        an IR-sensitive FPA detector, where each pixel represents 0.54 × 0.54
           2
        μm  area of the sample creating oversampled images at all wavenum-
        bers in the mid-IR. This facility will provide the opportunity to obtain
        chemical images with diffraction-limited resolution of the illuminated
        area in under a minute.
            Synchrotron radiation is inherently a broadband, bright, and sta-
        ble source of IR radiation. 26,27  In the mid-1990s, the first experiments
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        using synchrotron radiation coupled to a commercial  and a home-
        built microscope 29,30  were reported. Since then, there has been a large
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