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sFTIR, Raman, and SERS Imaging of Fungal Cells   149


        adjacent to a Klarite substrate and hyphae were allowed to grow
        overnight in a moist chamber at 28ºC. After freezing and drying, the
        sample is ready for spectroscopic analysis.
            The region shown in Fig. 5.13a contains a hypha that has grown
        out several millimeters from the agar block and is free of any other
        material. Several spores from the mature base of the colony have fallen
        onto the substrate close to the growing hypha, and under the humid
        growing conditions, have just germinated. Clumps of spores are more
        likely to germinate in nutrient-free conditions than are isolated spores.
        Short germ tubes can be seen emerging from several of these spores.
            A Raman map of the area was recorded with the 785 nm edge set at
        5.0 percent power, 1200 L/mm grating, exposure time 4.00 seconds for
        an entire column or about 200 ms/point.  The SERS enhancement is
        immediately obvious from the processed image (Fig. 5.13b) that shows
                                       −1
        the intensity of the peak at 1050 cm , characteristic of these hyphae
                                     51
        under normal Raman spectroscopy.  Four spectra representative of the
        variety observed in this map are shown in Fig. 5.13c. The weakest
        intensity (purple) is associated with the hypha growing across the
                                    −1
        smooth gold surface. The 1050 cm  peak is not visible; the fact that this
        region even registers in the mapping image is due to the slight increase
        in baseline from the natural fluorescence of the biomaterial. The next
        strongest signal (green) comes from the mature hypha on the SERS
                                      −1
        patterned surface. Here the 1050 cm  peak is clearly apparent.
            The signal enhancement factor provided by the SERS active substrate
        cannot be properly quantified from this map, since we have no signal at
        all from the smooth gold for comparison in this map, but it is clearly sev-
        eral orders of magnitude. An estimate is obtained by comparison between
        the green spectrum from Fig. 5.13 with a Raman spectrum from a hypha
        on the smooth gold surface, illustrated in Fig. 5.14. The Raman spectrum
        was acquired with 640 seconds of exposure at 0.1 percent laser power,
        compared to 0.045 seconds exposure at 0.5 percent laser power and
        the same optics for the SERS spectrum. From the signal to noise for these two
        spectra, scaled for power and exposure time, we get a rough estimate of 4000
        as the SERS enhancement factor.
            Some additional peaks appear in spectra from regions containing
        the germinating spores (blue, red) in Fig. 5.13. We interpret these
        strong spectral peaks as arising from the minute quantities of exu-
        date produced as hyphae extend, from spores as they begin the ger-
        mination process or from adhesion materials associated with the
        spore. Such molecules would likely be able to occupy SERS hot
        spot sites within the pyramidal wells or at the edges of the wells,
        where the enhanced electric field will provide the expected SERS
        magnification. Again, neither the molecular identity of these com-
        pounds nor the quantity can be established at this point; thus the
        true SERS enhancement factor cannot be obtained. Likewise, we
        can only speculate about the possibility that we are detecting spectra
        from single molecules, or even few molecules.
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