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46    Cha pte r  T w o


        cells from four separate flow chamber assemblies have been meas-
        ured and analyzed (neglecting assemblies with problems). Out of
        35 cells, 2 exhibited an initial F /F  value of zero and were excluded
                                  v  m
        from further analysis. The thick, solid black line in Fig. 2.13a corre-
        sponds to the F /F  average of the remaining 33 cells with the error
                      v  m
        bars indicating the standard deviation at each time point. The overall
        average and standard deviation of all cells over all nine time points is
        F /F = 0.40 ± 0.17, respectively. Since we performed the PAM fluo-
         v  m
        rescence measurements on individual cells within the population the
        relatively high standard deviation is likely due to the variability
        among the cells. The standard deviation of the time development of
        the average (thick, solid line) is 0.03 (or 7 percent). The dashed lines
        show individual  F /F  measurements of five representative algal
                         v  m
        cells out of 33. As can be seen from the dashed lines, some cells ceased
        their photosynthetic activity at the end of the experiment, some had a
        constant activity and some even increased their activity during 260
        minutes of the experiments. The thick, solid curve however confirms
        that on average 33 observed cells could maintain a fairly constant
        F /F  (within 7 percent) over the entire experiment period.
         v  m
            The average and natural variability (standard deviation) of F /F
                                                              v  m
        among the 33 cells is 0.43 ± 0.18, respectively, which is derived from
        the measurements at the initial time point only (t = 15 minute.). This
        assumes that the influence of the flow chamber is minimal at that
        point in time. The cells whose  F /F  values over time remained
                                      v  m
        within a standard deviation (42 percent) relative to the initial F /F
                                                              v  m
        were considered healthy. All other cells were considered unhealthy.
        The black line in Fig. 2.13b represents the percentage of cells that
        remain viable up to the corresponding point in time illustrating the
        development of the number of healthy cells in the chamber with time.
        It demonstrates that after the first hour the number of photosyntheti-
        cally active cells stays virtually constant. The red bars in Fig. 2.13b
        show a histogram of the number of dying cells in each time slot. The
        elevated bar (second from the left) corresponds to cells that ceased
        their photosynthetic activity within roughly 1 hour after the flow
        chamber was filled. This might be due to cells that were stressed
        before they were loaded into the flow chamber. After 260 minutes
        61 percent (= 20 cells) of the initial 33 cells remain photosynthetically
        active. These PAM measurements demonstrate the viability of algal
        cells in the flow chamber for an extended period of time.
            In this section, we presented a new flow chamber design for in
        vivo mid-IR and visible measurements of biological cells. The use of
        sub-micrometer-thick diamond as a window material has several
        major advantages over conventional halide windows like ZnS. Nota-
        bly, it exhibits lower optical aberrations and is transparent over an
        extended spectral range in the mid-IR as well as in the visible. The
        slim design of the flow chamber accommodates high-resolution/
        numerical aperture microscope objectives, which typically have a
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